Dominique Lavenier  

      
HOME        RESEARCH        PUBLICATIONS         TEACHING         SOFTWARE    




   JOURNALS

   CONFERENCES

   BOOK CHAPTERS

   REPORTS


   LIVRES

   REVUES

   CONGRES

   VULGARISATION

   BREVETS

    Journals

    2010 F. Legeai, G. Risk, T. Walsh, O. Edwards, K. Gordon, D. Lavenier, N. Leterme, A. Méreau, J. Nicolas, D. Tagu, S. Jaubert-Possamai, Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum, BMC Genomics 2010 to appear(). [link]
    2010 The International Aphid Genomic Consortium, Genome Sequence of the Pea Aphid Acyrthosiphon pisum, PLOS Biology 2010 8(2). [link]
    2009 V.H. Nguyen, D. Lavenier, PLAST: parallel local alignment search tool for database comparison, BMC Bioinformatics 2009 10(329). [link]
    2008 P. Peterlongo, L. Noé, D. Lavenier, V.H. Nguyen, G. Kucherov, M. Giraud, Optimal neighborhood indexing for protein similarity search, BMC Bioinformatics 2008 9(534). [link]
    2008 X. Jiang, D. Lavenier, S. Yau, Coding Region Prediction Based on a Universal DNA Sequence Representation Method, Journal of Computational Biology 2008 15(10). [link]
    2007 M. Giraud, P. Veber, D. Lavenier, Path-equivalent developments in acyclic weighted automata, Internatinonal Journal of Foundations of Computer Science 2007 18(4). [link]
    2007 D. Lavenier, G. Georges, X. Liu, A Reconfigurable Index FLASH Memory tailored to Seed-Based Genomic Sequence Comparison Algorithms, The Journal of VLSI signal processing systems. Special issue on Computing Architectures and Acceleration for Bioinformatics Algorithms 2007 48(3). [link]
    2006 S. Tempel, M. Giraud, D. Lavenier, IC. Lerman, AS. Valin, I. Couée, A. El Amrani, J. Nicolas, Domain organization within repeated DNA sequences: application to the study of a family of transposable elements, Bioinformatics 2006 22(16). [link]
    2005 M. Giraud, D. Lavenier, Dealing with Hardware Space Limits when Removing Epsilon-Transitions in a Genomic Weighted Finite Automaton., Journal of Automata, Languages and Combinatorics 2005 10(2/3). [link]
    2005 R. Andonov, D. Lavenier, P. Veber, N. Yanev, Dynamic programming for LR-PCR segmentation of bacterium genomes, Concurrency and Computations: Practice and Experience 2005 17(14). [link]
    2005 P. Durand, D. Lavenier, M. Leborgne, A. Siegel, P. Veber, J. Nicolas, Applying Complex Models on Genomic Data, ERCIM News 2005 (60). [link]
    2005 S. Guyetant, M. Giraud, L. L'Hours, S. Derrien, S. Rubini, D. Lavenier, F. Raimbault, Cluster of re-configurable nodes for scanning large genomic banks, Parallel Computing 2005 31(1). [link]
    2004 N. Ben Zakour, M. Gautier, R. Andonov, D. Lavenier, M-F. Cochet, P. Veber, A. Sorokin, Y. Le Loir, GenoFrag: software to design primers optimized for whole genome scanning by long-range PCR amplification , Nucleic Acids Research 2004 32(1). [link]
    2003 M. Gokhale, J. Frigo, K. McKabe, J. Theiler, C. Wolinski, D. Lavenier, Early Experience with a Hybrid Processor: K-Means Clustering, Journal of Supercomputing 2003 24(4).
    2000 D. Lavenier, An FPGA Systolic Array Using Pseudo Random Bit Generator for Computing Goldbach Partitions, Integration, The VLSI Journal 2000 30(1).
    1998 D. Lavenier, Speeding up genome computations with a systolic accelerator, SIAM news 1998 31(8).
    1997 P. Guerdoux-Jamet, D. Lavenier, SAMBA: Hardware Accelerator for Biological Sequence Comparison, CABIOS 1997 13(6).
    1996 D. Lavenier, Dedicated Hardware for Biological Sequence Comparison, Journal of Universal Computer Science 1996 2(2).
    1996 R. McConnell, D. Lavenier, Prototyping of VLSI Component from a Formal Verification, Journal of VLSI Signal Processing 1996 12(1).
    1995 D. Lavenier, F. Raimbault, P. Frison, I/O and Computation Overlap on SIMD Systolic Arrays, Journal of VLSI Signal Processing 1995 9(3).
    1994 F. Charot, P. Frison, E. Gautrin, D. Lavenier, P. Quinton, C. Wagner, From equations to hardware. Towards the systematic mapping of algorithms onto parallel architectures, International Journal of Pattern Recognition and Artificial Intelligence 1994 8(2).
    1993 D. Lavenier, An Integrated 2D Systolic Array for Spelling Correction, Integration, the VLSI Journal 1993 15(4).
Last Modified 2010-03-25