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Genomic Applications
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DNA Database Search
This is the basic and daily task of biologists. GenBank will be indexed in the
FLASH memory of ReMIX and query with large DNA sequences.
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Intensive Genomic Computation
In cooperation with a INSERM (U693, CHU Angers) biologist team involved
in the mitochondrial diseases, ReMIX will be used in the comparison of
400,000 bacterium proteins against various mammal genomes, such as Human,
dog, mouse, etc.
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Search of repeat sequences into large genomes
A very large part of the genomes are made of repeated
sequences. In cooperation with the Jacques Monod Institute, Paris,
we are currently investigated a new index scheme to favour
extraction of repeated sequences.
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Extraction of Maximal Repeat in full genomes
Maximal repeats are particular words from which complex genome
structures such as, CRISP or TRANSPOSONS, can be extracted. They
can be easily exhibited from a suffix tree build from a full
genome. One of the research axe of the ANR modulome
project is to map a large suffix tree into the ReMIX FLASH memory
for speeding up the maximal repeat extraction.
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